Molecular docking is a critical process in structure-based drug discovery to predict the binding conformations between a protein and a small molecule ligand ...

Molecular docking is a critical process in structure-based drug discovery to predict the binding conformations between a protein and a small molecule ligand ...

FlexiDock: Compositional diffusion models for flexible molecular docking. Z Wang, B Srinivasan, Z Shen, G Karypis, H Rangwala. 2023. Conditional Invariances ...

Abstract:Large text-guided diffusion models, such as DALLE-2, are able to generate stunning photorealistic images given natural language ...

We demonstrate the effectiveness of our model on a large test set of protein-ligand complexes and show that it outperforms existing state-of-the-art models. 2.

Molecular docking aims to predict the 3D pose of the ligand in the protein binding site. Docking is commonly used in structure-based virtual screening, wherein ...

Dec 15, 2023 · In the field of structure-based drug design, accurately predicting the binding conformation of ligands to proteins is a long-standing objective.

We instead frame molecular docking as a generative modeling problem and develop DiffDock, a diffusion generative model over the non-Euclidean ...