Mar 6, 2023 · To evaluate our model, we propose a comprehensive framework to evaluate the quality of sampled molecules from different dimensions. Empirical ...
Feb 1, 2023 · The paper tackles target-aware small molecule generation. Specifically, small synthetic ligand molecules are generated using a deep generative ...
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The official implementation of 3D Equivariant Diffusion for Target-Aware Molecule Generation and Affinity Prediction (ICLR 2023) - guanjq/targetdiff.
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MOLECULE GENERATION AND AFFINITY PREDICTION. Jiaqi ... Since our goal is to generate 3D molecules based on a given protein binding site, the model needs to.
Nov 24, 2023 · We systematically explore the design space of 3D equivariant diffusion models, including various parameterizations, loss weightings, data, and ...
In this work, a generative diffusion model for molecular 3D structures based on target proteins as contextual constraints is established, at a full-atom level ...
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Feb 14, 2024 · 3D Equivariant Diffusion for Target-Aware Molecule Generation and Affinity Prediction. Jiaqi Guan, Wesley Wei Qian, Xingang Peng, Yufeng Su ...
Apr 21, 2024 · In this work, we develop an interaction prompt guided diffusion model, InterDiff to deal with the challenges. Four kinds of atomic interactions ...
Mar 6, 2023 · Empirical studies show the proposed 3D equivariant diffusion model could generate molecules with more realistic 3D structures and better ...
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Jan 8, 2024 · These approaches focus on direct generation of compounds in the 3D space to match protein binding pockets with diverse deep learning techniques.
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